Monday, March 4, 2013

[Note]Monitoring damage of coastal forests in Sanriku coast after 2011 Tohoku Tsunami

Background Information

Japan is an island nation surrounded by oceans. In order to protect inland area from coastal disasters caused by sea breezes, sand blow high tides, and tsunamis, coastal forests are developed in large area. In Tohoku Region, a large area of coastal forests are suffered the damage by 2011 Tohoku Tsunami. According to a report by the Ministry of Agriculture, Forestry and Fisheries, Japan, the total area of coastal forest in Tohoku region suffered the inundation is 2800ha and 40% (1050ha) of forest area are considered to be damaged over 75% of area. According to Kamthonkiat et al., NDVI fluctuation is effective for monitoring changes in mangroves during the pre- and post- tsunami periods.

Questions to be answered

How to detect the distribution of the damage on coastal forest and where and what type of vegetation suffered most by tsunami? (area/vegetation type/topography)

Study Area

The study area is coastal area along Sanirku coast from Rikuzentakata-city, Iwate prefecture to Onagawa-cho, Miyagi prefecture in Tohoku region, Japan. The total length of the coastline is about 338km. There are some areas developed as artificial coastal forests for preventing coastal disasters including salt damage, high tides, and tsunamis. (Appendix Figure 1)

Data and data collection


  • Pre-Tsunami ASTER VNIR 3A01 (5/5/2010) (spatial resolution: 15m)
  • Post-Tsunami ASTER VNIR 3A01 (4/13/2011) (spatial resolution: 15m)
  • DEM (Spatial Resolution: 10m) made by the Geospatial Information Authority of Japan (http://fgd.gsi.go.jp/download/) (in Japanese)
  • GIS data obtained from National Surveys on the Natural Environment (surveys on vegetation, rivers, lakes/marshes, coastlines, seaweed beds/tidal flats/coral reefs, etc.) by the Biodiversity Center of Japan (http://www.biodic.go.jp/trialSystem/top_en.html)

Both ASTER VNIR products are orthorectified. However, since both products are not atmospherically corrected, only the DNs are available for analysis in this study.

Remote sensing methods

1. Image normalization using Radiometric Control Set (RCS) Method
Since the remote sensing images were taken in different month, it is necessary to normalize the reflectance of images. In this study, the images of two dates are normalized using RCS method, which is same to Multiple Date Image Normalization Using Regression.

2. Calculate NDVI and the Simple Ratio Red/NIR ratio
In order to grasp the distribution and degree of damage, multiple different indexes are calculated and discussed.

3. Calculate the change
The change ratio of NDVI and Simple Ratio are calculated by the following equation.
(NDVI change ratio) = Log2((NDVI of Pre-Tsunami) / (NDVI of Post-Tsunami))
(SR change ratio) = Log2((SR of Pre-Tsunami) / (SR of Post-Tsunami))

4. Categorize the ratio by setting thresholds of the damage by sampling pixel value in area in which degrees of damage were known by field survey
1. Damage ratio > 75% (almost snapped and washed away)
2. Damage ratio > 25% (partially snapped and washed away)
Based on field surveys conducted in 2011 and manual detection of aerial photos, two areas for each class are selected and the mean values of change ratios are used as thresholds of each class. For the class “Damage ratio > 75%”, pixel values in forests of Koizumi and Rikuzentakata are sampled and the mean value is used as the threshold of the class. For the class “Damage ratio > 25%”, pixel values in forests of Oya coast and Oshima are sampled and the mean value is used as the threshold of the class.[appendix] In the next step, each image of change ratio are reclassified to the classes. In addition, based on the GIS data of vegetation survey, the pixels in “forests” located within 200m from coastline are extracted, visualized and the total areas of classes are calculated. (Appendix Figure 3, 4, 5)

5. Supervised classification of the images and change detection
In order to discuss the distribution of the damage in types of vegetation, supervised classification is conducted and compared with pre and post tsunami. The classes are consists of 1: Urban/Barren, 2: Forests, 3: Agriculture/Rangelands, 4: Water. For the coastal area that located within 200m from coastline, the confusion matrix is created.

Results


1. NIR/Red Simple Ratio and the Change Ratio
Simple Ratio
ClassPixel CountArea(ha) %
less than 25%42275951.1875 86.07%
25%~75% 6338 142.605 12.90%
and over 75% 503 11.3175 1.02%
sum 49116 1105.11

In the 1105 ha of total area (49116 pixels) extracted from the procedure, 11 ha (503 pixels) of area is classified as “Damage ratio > 75%” and 142 ha of area is classified as “Damage ratio > 25%”.

2. NDVI and the Change Ratio
NDVI
Class Pixel Count Area(ha) %
less than 25% 41856 941.76 85.22%
25%~75% 6881 154.8225 14.01%
and over 75% 379 8.5275 0.77%
sum 49116 1105.11

In the 1105 ha of total area extracted from the procedure, about 9 ha of area is classified as “Damage ratio > 75%” and 155 ha of area is classified as “Damage ratio > 25%”.

3. The distribution of the damage

Height (m) Damage ratio < 25% (ha) Damage Ratio > 25% (ha) Damage ratio > 75% (ha)
0 - 2.5 61.8525 32.49 7.29
2.5 - 6.6 80.6625 22.455 1.1025
6.6 - 10.2 83.5875 21.5325 0
10.2 - 15.5 91.5525 15.8625 0
15.5 - 20.4 95.355 12.8475 0
20.4 - 24.8 98.9775 9.0675 0
24.8 - 30.3 99.3825 8.235 0
30.3 - 36.2 98.3025 9.225 0
36.2 - 45.8 94.8825 7.6725 0
45.8 - 120.2 94.0725 6.8175 0

Height is classified into 10 classes based on quantile classification of height values of each pixel in coastal forests within 200m from coastline (Appendix figure 6). Obviously the lowland areas suffered more severe damage than other area. In addition, coasts facing the epicenter (southwest from study area) suffered more severe damage.

4. Supervised classification of the images and change detection
(Post)Urban/Barren (ha) (Post)Forest (ha) (Post)Agricultrue/Grass (ha) (Post)Water (ha) (Post)sum (ha)
(Pre)Urban/Barren (ha) 73.5075 96.39 28.53 23.8725 222.3
(Pre)Forest (ha) 30.3525 506.4525 17.01 16.155 569.97
(Pre)Agriculture/Grass (ha) 40.5675 114.1875 40.0275 29.7675 224.55
(Pre)Water (ha) 7.3575 17.2125 10.0575 26.865 61.4925
sum (ha) 151.785 734.2425 95.625 96.66 1078.3125

Within the area in the forest features assigned by vegetation survey, 58% area is actually classified as forest in the pre-tsunami image. Overall, comparing pre-tsunami and post-tsunami images, total vegetation area (forest + agriculture/grass) was increased by 35ha, from 794ha to 829ha. The total forest area was increased by 164ha, from 570ha to 734ha. The total water area was increased by 35ha. (Appendix Figure 9)

Discussions

1. Advantages and disadvantages of using NDVI and Simple Ratio
Compared to the simple ratio, NDVI compresses the range of values in vegetation and expands the range of values in urban and water area. Since this study compares the change ratio of each indices and focuses coastal forest, the result of the Simple Ratio has wider histogram (appendix) of pixel values and extracts more pixels with severer damage ratios. In addition, atmospheric corrections of images are required for future work in order to acquire more accurate indices values.

2. Supervised classification of the images and change detection
In the area classified as forest in the pre-tsunami image, 16ha of area is classified as water in the post-tsunami image, mostly supporting the extraction results from the Simple Ratio and NDVI change ratio methods. However, considering the classification results, because the FROM-TO information is confused, the result does not provide more information.

Conclusion

Based on the NDVI and SR change ratio, in the coastal forests in the study area, more than 8.5ha of area is considered to be suffered 75% of the forest. Similarly, based on the supervised classification method, about 16ha of the coastal forests in the study area were completely inundated.

References:
Kamthonkiat, D., Rodfai, C., Saiwanrungkul, A., Koshimura, S., & Matsuoka, M. (2011). Geoinformatics in mangrove monitoring: damage and recovery after the 2004 Indian Ocean tsunami in Phang Nga, Thailand. Natural Hazards and Earth System Science, 11(7), 1851–1862. Retrieved from http://www.nat-hazards-earth-syst-sci.net/11/1851/2011/

Appendix
Figure 1. Study Area

Figure 2. Histogram of Simple Ratio Change Ratio and NDVI Change Ratio

Figure 3. Sampling area for Damage Ratio > 75% in Rikuzentakata and Koizumi


Figure 4. Sampling area for Damage Ratio > 25% in Oshima

Figure 5. Sampling area for Damage Ratio > 25% in Oya coast

Figure 6. Classification of height values based on quantiles in ArcGIS tool

Figure 7. Distribution of NDVI change ratio (full view of study area)

Figure 8. Distribution of Simple Ratio Change Ratio (full view of study area)

Figure 9. Comparison of Pre-Tsunami and Post-Tsunami Classification Results

Sunday, February 3, 2013

2012 Review and 2013 Preview

Review 2012


  • January 2012
    • Finished applications for graduate programs
    • Graduation Thesis
  • February 2012
    • Application results from graduate programs returned
  • March 2012
    • Fieldwork in Fukushima
    • Graduated from Keio University
  • April 2012
    • Started working at Chubu University
  • August 2012
    • Started Living in Maryland, U.S.
    • Entered a graduate program in University of Maryland, College Park

Objectives in 2013


  • To start working on projects in University of Maryland

Preview 2013


  • February 2013
    • TOEFL iBT
  • March 2013
    • ASPRS Annual Conference
  • April 2013
    • 4/9 ~ 4/13 Association of American Geographers' Annual Meeting
    • http://www.aag.org/cs/annualmeeting/about_the_meeting
  • May 2013
    • TOEFL iBT
  • June 2013
    • GRE
  • October 2013
    • Boston Career Forum
  • November 2013
    • Prepare applications for Ph.D programs
  • December 2013
    • Finish all applications for Ph.D program
  • Beyond 2014..
    • Graduate from University of Maryland with a master's degree
    • Enter a Ph.D program

Monday, January 7, 2013

[Note]Hotspot Analysis of Fires in U.S. during 2001 to 2011 based on Vegetation Type

Introduction

  • Whitlock et al. suggests that the future fire condition could be more severe in northwestern US based on the simulation of potential future climate and vegetation. (C. Whitlock et al., 2003)
  • Odion et al. implies that fires in multiaged, closed forests, the predominant vegetation, was less severe than open forest and shrubby non forest vegetation in western United States during 1920 to 1987. (D. Odion et al., 2004)
  • According to Vadrevu et al., "Use of vegetation fire statistics including records of ignition sources and the number of fire occurrences, is an effectual method to quantify the temporal and spatial characteristics of fire regimes" (K. Vadrevu et al., 2011)

Objectives

  • To show distribution of hotspots of fire in U.S. from 2001 to 2011
  • To identify vegetational characteristics of the hotspots
  • To discuss temporal changes of the hotspots

Study Area

Continental United States

Data Description

Method


  1. Compute annual mean center and standard deviation ellipse and Kernel Density of fire from 2001 to 2011
  2. Compute and Global Moran’s I
  3. Cluster analysis to identify hotspots of fires
    1. Divide Point data into two groups
    2. Group1: 2001 to 2006
    3. Group2: 2007 to 2011
    4. K-Means Partitioning Clustering using CrimeStat(Clusters:5, Separation: 4, Number of Standard Deviations for the Ellipses: 1X)
  4. Overlay analysis to identify vegetational characteristics of clusters
    1. Cross tabulation(Tabulate Area) using hotspots ellipse and vegetation data
  5. Discuss the temporal change of the clusters
    1. Changes in location, frequency, and vegetational characteristics

Result

Annual Change of Mean Center

Temporal Trend was not observed by computing mean centers and standard deviation ellipse.

Kernel Density

Areas with high density can be observed near Idaho,  Kansas-Oklahoma, and  Georgia-Florida.

Global Moran’s I

The Number of Fire


The Average FRP of Fire
Both the number of fire and the average FRP are spatially autocorrelated in state level.


Conclusion



  1. Fire occurrence and Average FRP in US is spatially autocorrelated in the level of state.
  2. Hotspots are observed in near Idaho, Southern California, Kansas-Oklahoma, Georgia-Florida in each period of years
  3. Temporal change of location of annual hotspots are not significant. However, most of the hotspots for 2001 to 2006 are located along the border or edge of the continent, an additional hotspot is observed in the middle of US for 2007 to 2011.
  4. In the western hotspots near Idaho and Southern California, "Closed to open shrubland" occupies large portion.
  5. In the southwestern hotspots near Georgia and Florida, "Closed broadleaved deciduous forest" occupies large portion.

Further Considerations



  • Regression analysis of number of fire cases and land use
  • Regression analysis of severity of fire and land use to find out the relationship between fire severity and vegetation
  • Methods to observe temporal change of fire severity
  • Employ Spatiotemporal Pattern Analysis

References
  • C. Whitlock, S. Shafer, J. Marlon, "The role of climate and vegetation change in shaping past and future fire regimes in the northwestern US and the implications for ecosystem management", Forest Ecology and management, 2003, Vol. 178, Issue 1-2, p 5-21, DOI: 10.1016/S0378-1127(03)00051-3
  • D. Oddion, E. Frost, J. Strittholt et al., "Patterns of Fire Severity and Forest Conditions in the Western Klamath Mountains, California Patrones de Severidad de Fuego y Condiciones del Bosque en las MontaƱas Klamath Occidentales, California", Conservation Biology, 2004, Vol. 18-4, p. 927-936, DOI: 10.1111/j.1523-1739.2004.00493.x
  • K. Vadrevu, I. Csiszar, E. Ellicott et al., "Hotspot Analysis of Vegetation Fires and Intensity in the Indian Region", IEEE JOURNAL OF SELECTED TOPICS IN APPLIED EARTH OBSERVATIONS AND REMOTE SENSING, 2011, Vol. PP, Issue. 99, p. 1-15